|
age_data_setup()
|
Set up age data from age distribution data |
|
assert_atomic()
|
x is atomic |
|
assert_bounded()
|
Assert that x is between bounds |
|
assert_file_exists()
|
Check that file exists at chosen path |
|
assert_in()
|
Assert that x is a subset of y |
|
assert_int()
|
Assert Integer |
|
assert_length()
|
Assert that x is of a specified length n |
|
assert_list()
|
Assert list |
|
assert_logical()
|
Assert logical |
|
assert_non_null()
|
x is not null |
|
assert_not_in()
|
Assert that none of x are in y |
|
assert_numeric()
|
Assert Numeric |
|
assert_pos()
|
x is positive (with or without zero allowed) |
|
assert_pos_int()
|
x is positive integer (with or without zero allowed) |
|
assert_single()
|
x is atomic and single valued (has length 1) |
|
assert_single_bounded()
|
Assert Single bounded |
|
assert_single_int()
|
Assert Single integer |
|
assert_single_numeric()
|
Assert Single Numeric |
|
assert_single_pos()
|
x is single positive (with or without zero allowed) |
|
assert_single_pos_int()
|
x is single positive integer (with or without zero allowed) |
|
assert_single_string()
|
Assert String |
|
assert_string()
|
Assert String |
|
assert_vector()
|
Assert Vector |
|
clusters_create()
|
Create clusters |
|
cluster_input_setup()
|
Cluster input setup |
|
cohort()
|
Cohort evaluation |
|
create_data_folder()
|
Create new data set |
|
create_ento_start_data()
|
Add entomological start data file to existing data folder |
|
crt_combined()
|
Combined control/intervention cluster trial run |
|
ento()
|
Entomological-only calculations |
|
findPosition()
|
Find position |
|
get_folder_data()
|
Plot pre-calculated data from dataset folder |
|
get_mainpop_data()
|
Get selected main population output data as a function of time |
|
load_dataset_folder()
|
Load data set from folder |
|
load_inputs()
|
Load input data from list of files |
|
mainpop()
|
Main population evaluation |
|
nice_format()
|
Nice Format |
|
plot_cohort_data()
|
Display results of cohort simulations |
|
plot_mainpop_data()
|
Plot graph of main population data |
|
plot_rainfall()
|
Plot year-round rainfall based on parameter file |
|
power_compute()
|
Power calculation |
|
tabulate_cohort_data()
|
Tabulate results of cohort simulations |
|
vectorpower
|
Power Calculation for Cluster Randomised Vector Control Trials |