Get selected main population output data as a function of time

Takes in detailed benchmark data as a list and returns selected benchmark values as a list

get_mainpop_data(
  input_list = list(),
  benchmark = "EIR",
  set_n_mv = 1,
  set_n_int = 1,
  age_start = 0,
  age_end = 65
)

Arguments

input_list	List containing mainpop output data
benchmark	Benchmark type to use in choosing clusters ("EIR", "slide_prev", "pcr_prev", or "clin_inc") Represents annual total in case of EIR, year-round average for others
set_n_mv	Baseline malaria level number(s) to output data for (from numbers in main population data, not original data set)
set_n_int	Intervention number(s) to output data for (from numbers in main population data)
age_start	Starting age to use when calculating prevalence or incidence over age range (not used with EIR)
age_end	End age to use when calculating prevalence or incidence over age range (not used with EIR)

Details

Function for taking output of mainpop(), selecting the desired benchmark (EIR, slide prevalence, PCR prevalence, clinical incidence) data, and outputting values of the benchmark as a function of time for the desired baseline malaria level(s) and intervention parameter value(s)